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Species belonging to selected taxon:
Glycine max
ABOUT THIS RECORD
ID:
MNEST040470
species:
Glycine max
miRNA family:
MIR393
source:
miRBase, original name:
gma-MIR393
(
MI0007216
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC
miRNA*
TCATGCTATCCCTTTGGATT
mismatches:
1
bulges:
1
View larger
pre-miRNA
GGAGGAGGCA
TCCAAAGGGATCGCATTGATC
CCAAATCCAAGCTTCAATATTCTTCTCTCTTTCCCACTCAAAATATTAATTTTATTTGGGA
TCATGCTA
TCCCTTTGGATT
TCTCCTTT
dot-bracket secondary structure
.(((((((.(
(((((((((((.((((.((((
((((((..(((.((.((((((....................)))))))).)))))))))))
)))))).)
))))))))))).
))))))).
SIMILARITIES
miRBase
vvi-MIR393b
:
0.0000000000001
PMRD
gma-miR393
:
8e-64
microPC
miR393
:
0.000000006
UniProt
no hits
RFAM
no hits
Identical with:
gma-miR393
from PMRD (
MNEST048576
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454, Northern
references
[
1
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"